5WDU (resolution: 7.00 Å)

ID Name Organism Chains bound to carbohydrates
1 Envelope glycoprotein gp160
Q2N0S6 (Q2N0S6_9HIV1)
Human immunodeficiency virus 1 3 chains bound to carbohydrates
Chain A [auth G]:
19 glycosylation head interfaces
14 glycosylation body interfaces
17 N-glycosylations
Chain C [auth F]:
20 glycosylation head interfaces
14 glycosylation body interfaces
17 N-glycosylations
Chain E [auth Q]:
18 glycosylation head interfaces
14 glycosylation body interfaces
17 N-glycosylations
2 bnAb NIH45-46 scFv
Heavy chain subclass: unknown
Homo sapiens 3 chains bound to carbohydrates
Chain B [auth D]:
2 glycosylation head interfaces
7 glycosylation body interfaces
Chain D [auth O]:
2 glycosylation head interfaces
9 glycosylation body interfaces
Chain F [auth W]:
2 glycosylation head interfaces
10 glycosylation body interfaces
3 Envelope glycoprotein gp160
Q2N0S6 (Q2N0S6_9HIV1)
Human immunodeficiency virus 1 3 chains bound to carbohydrates
Chain G [auth A]:
4 glycosylation head interfaces
3 N-glycosylations
Chain L [auth J]:
4 glycosylation head interfaces
3 N-glycosylations
Chain Q [auth R]:
4 glycosylation head interfaces
3 N-glycosylations
4 bnAb PGT122 Fab light chain
Light chain subclass: unknown (unknown)
Homo sapiens 3 chains bound to carbohydrates
Chain H [auth B]:
1 glycosylation head interface
5 glycosylation body interfaces
Chain M [auth K]:
1 glycosylation head interface
3 glycosylation body interfaces
Chain R [auth S]:
1 glycosylation head interface
5 glycosylation body interfaces
5 bnAb PGT122 Fab heavy chain
Heavy chain subclass: IGHV4
Homo sapiens 3 chains bound to carbohydrates
Chain I [auth C]:
2 glycosylation head interfaces
8 glycosylation body interfaces
Chain N [auth L]:
2 glycosylation head interfaces
8 glycosylation body interfaces
Chain S [auth T]:
2 glycosylation head interfaces
8 glycosylation body interfaces
6 bnAb 35O22 Fab heavy chain
Heavy chain subclass: unknown
Homo sapiens 3 chains bound to carbohydrates
Chain J [auth H]:
1 glycosylation head interface
5 glycosylation body interfaces
Chain O [auth M]:
1 glycosylation head interface
6 glycosylation body interfaces
Chain T [auth U]:
1 glycosylation head interface
4 glycosylation body interfaces
7 bnAb 35O22 Fab light chain
Light chain subclass: unknown (unknown)
Homo sapiens 3 chains bound to carbohydrates
Chain K [auth I]:
1 glycosylation head interface
3 glycosylation body interfaces
Chain P [auth N]:
1 glycosylation head interface
2 glycosylation body interfaces
Chain U [auth V]:
1 glycosylation head interface
2 glycosylation body interfaces

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains
8 α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 30 (9 molecules) A, C, D, E, F, G, H, J, K, L, O, P, Q, R, T, U
[auth A,B,F,G,H,I,J,M,N,O,Q,R,S,U,V,W]
9 il-7racdw127 β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 9 (3 molecules) A, C, E, H, I, M, N, R, S
[auth B,C,F,G,K,L,Q,S,T]
10 α-D-mannopyranose-(1-6)-β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 12 (3 molecules) A, B, C, D, E, F
[auth D,F,G,O,Q,W]
11 α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)]α-D-mannopyranose-(1-6)-[α-D-mannopyranose-(1-3)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 21 (3 molecules) A, B, C, D, E, F, J, O, T
[auth D,F,G,H,M,O,Q,U,W]
12 α-D-mannopyranose-(1-2)-α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 18 (3 molecules) A, C, D, E, F
[auth F,G,O,Q,W]
13 il-7racdw127 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 6 (3 molecules) A, C, E
[auth F,G,Q]
14 α-D-mannopyranose-(1-2)-α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)]α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 21 (3 molecules) A, C, E, H, I, M, N, R, S
[auth B,C,F,G,K,L,Q,S,T]
15 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 33 (33 molecules) A, B, C, D, E, F, G, K, L, P, Q, U
[auth A,D,F,G,I,J,N,O,Q,R,V,W]

Binding sites


Related structures