2Q7Y (resolution: 1.95 Å)

ID Name Organism Chains bound to carbohydrates
1 Antigen-presenting glycoprotein CD1d1
P11609 (CD1D1_MOUSE)
Mus musculus 2 chains bound to carbohydrates
Chain A:
1 binding site
3 glycosylation head interfaces
3 glycosylation body interfaces
3 N-glycosylations
Chain C:
2 binding sites
3 glycosylation head interfaces
1 glycosylation body interface
3 N-glycosylations
2 Beta-2-microglobulin
P01887 (B2MG_MOUSE)
Mus musculus 0 chain bound to carbohydrates

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains Binding affinity
3 il-7racdw127 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 4 (2 molecules) A, C
4 α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 3 (1 molecule) A
5 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 3 (3 molecules) A, C
6 N-[(1S + 2r + 3e)-1-({[α-D-galactopyranosyl-(1->3)-β-D-galactopyranosyl-(1->4)-β-D-glucopyranosyl]oxy}methyl)-2-h ydroxyheptadec-3-en-1-yl]octanamide 3 (2 molecules) A, C -logKd/Ki=4.30, Kd=50uM (PDBbind-CN) ;

Binding sites


Related structures


Bound to carbohydrates
Without carbohydrates