3RUG (resolution: 2.20 Å)

ID Name Organism Chains bound to carbohydrates
1 Antigen-presenting glycoprotein CD1d1
P11609 (CD1D1_MOUSE)
Mus musculus 2 chains bound to carbohydrates
Chain A:
1 binding site
3 glycosylation head interfaces
1 glycosylation body interface
3 N-glycosylations
Chain C:
1 binding site
3 glycosylation head interfaces
1 glycosylation body interface
3 N-glycosylations
2 Beta-2-microglobulin
P01887 (B2MG_MOUSE)
Mus musculus 0 chain bound to carbohydrates
3 Valpha10(mouse variable domain, human constant domain) Mus musculus 2 chains bound to carbohydrates
Chain E:
1 binding site
Chain G:
1 binding site
4 Vbeta8.1(mouse variable domain, human constant domain) Mus musculus 1 chain bound to carbohydrates
Chain H:
1 glycosylation body interface

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains Binding affinity
5 il-7racdw127 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 4 (2 molecules) A, C, H
6 (11e + 14e)-N-[(2S + 3S + 4r)-1-(α-D-glucopyranosyloxy)-3 + 4-dihydroxyoctadecan-2-yl]icosa-11 + 14-dienamide 2 (2 molecules) A, C, E, G Kd=4.4uM (MOAD)
7 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 4 (4 molecules) A, C

Binding sites


Related structures


Bound to carbohydrates
Without carbohydrates