6MJ4 (resolution: 2.00 Å)

ID Name Organism Chains bound to carbohydrates
1 T cell receptor alpha variable 11,T cell receptor alpha variable 11,T cell receptor alpha joining 18,Human nkt tcr alpha chain, chimeric protein
K7N5M3, A0A0B4J1J9
Mus musculus 1 chain bound to carbohydrates
Chain A [auth C]:
1 binding site
2 Beta-chain,T cell receptor chain,T cell receptor beta constant 2, CHIMERIC PROTEIN
A2NTY6, A0N8J3, A0A5B9
Mus musculus 0 chain bound to carbohydrates
3 Antigen-presenting glycoprotein CD1d1
P11609 (CD1D1_MOUSE)
Mus musculus 1 chain bound to carbohydrates
Chain C [auth A]:
1 binding site
3 glycosylation head interfaces
3 glycosylation body interfaces
3 N-glycosylations
4 Beta-2-microglobulin
P01887 (B2MG_MOUSE)
Mus musculus 0 chain bound to carbohydrates

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains Binding affinity
5 il-7racdw127 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 2 (1 molecule) C
[auth A]
6 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-[α-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-β-D-glucopyranose 3 (1 molecule) C
[auth A]
9 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 1 (1 molecule) C
[auth A]
10 N-[(2S + 3S + 4r)-3 + 4-dihydroxy-1-{[4-O-(prop-2-en-1-yl)-α-D-galactopyranosyl]oxy}octadecan-2-yl]hexacosanamide 1 (1 molecule) A, C -logKd/Ki=7.72, Kd=19.1nM (PDBbind-CN)

Binding sites


Related structures


Bound to carbohydrates
Without carbohydrates