3UBX (resolution: 3.10 Å)

ID Name Organism Chains bound to carbohydrates
1 Antigen-presenting glycoprotein CD1d1
P11609 (CD1D1_MOUSE)
Mus musculus 2 chains bound to carbohydrates
Chain A:
1 binding site
2 glycosylation head interfaces
1 glycosylation body interface
2 N-glycosylations
Chain C [auth D]:
1 binding site
2 glycosylation head interfaces
1 glycosylation body interface
2 N-glycosylations
2 Beta-2-microglobulin
P01887 (B2MG_MOUSE)
Mus musculus 0 chain bound to carbohydrates
3 L363 light chain (IGKV13-84*01)
Light chain subclass: IGKV13 (Kappa)
Mus musculus 2 chains bound to carbohydrates
Chain E [auth L]:
1 binding site
Chain G [auth I]:
1 binding site
4 L363 heavy chain (IGHV9-4*02)
Heavy chain subclass: IGHV9
Mus musculus 1 chain bound to carbohydrates
Chain F [auth H]:
1 binding site

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains Binding affinity
5 il-7racdw127 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 4 (2 molecules) A, C
[auth A,D]
6 (11z + 14z)-N-[(2S + 3S + 4r)-1-(α-D-galactopyranosyloxy)-3 + 4-dihydroxyoctadecan-2-yl]icosa-11 + 14-dienamide 2 (2 molecules) A, C, E, F, G
[auth A,D,H,I,L]
-logKd/Ki=7.60, Kd=25.2nM (PDBbind-CN) ;
7 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 2 (2 molecules) A, C
[auth A,D]

Binding sites


Related structures


Bound to carbohydrates
Without carbohydrates