6BNL (resolution: 2.60 Å)

ID Name Organism Chains bound to carbohydrates
1 Antigen-presenting glycoprotein CD1d1
P11609 (CD1D1_MOUSE)
Mus musculus 2 chains bound to carbohydrates
Chain A:
1 binding site
3 glycosylation head interfaces
1 glycosylation body interface
3 N-glycosylations
Chain E:
1 binding site
3 glycosylation head interfaces
1 glycosylation body interface
3 N-glycosylations
2 Beta-2-microglobulin
P01887 (B2MG_MOUSE)
Mus musculus 0 chain bound to carbohydrates
3 NKT Valpha14 (MOUSE) - 2C12 TCR - Hybrid mouse variable and human constant domains Homo sapiens 2 chains bound to carbohydrates
Chain C:
1 binding site
Chain G:
1 binding site
4 NKT Vbeta8.2 (MOUSE) - 2C12 TCR - hybrid mouse variable and human constant domains Mus musculus 0 chain bound to carbohydrates

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains Binding affinity
5 il-7racdw127 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 4 (2 molecules) A, E
6 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 4 (4 molecules) A, E
7 N-[(2S + 3r)-3-hydroxy-1-{[6-O-(3-phenylpropanoyl)-α-D-galactopyranosyl]oxy}octadecan-2-yl]hexacosanamide 2 (2 molecules) A, C, E, G -logKd/Ki=6.96, Kd=110nM (PDBbind-CN) ;

Binding sites


Related structures


Bound to carbohydrates
Without carbohydrates