4Y2D (resolution: 3.05 Å)

ID Name Organism Chains bound to carbohydrates
1 Antigen-presenting glycoprotein CD1d1
P11609 (CD1D1_MOUSE)
Mus musculus 2 chains bound to carbohydrates
Chain A:
2 binding sites
3 glycosylation head interfaces
3 N-glycosylations
Chain E:
3 binding sites
3 glycosylation head interfaces
1 glycosylation body interface
3 N-glycosylations
2 Beta-2-microglobulin
P01887 (B2MG_MOUSE)
Mus musculus 0 chain bound to carbohydrates
3 Chimeric TCR Valpha14/Jalpha18 chain (mouse variable domain, human constant domain)
A0A0B4J1J9, P01848
Mus musculus, Homo sapiens 2 chains bound to carbohydrates
Chain C:
2 binding sites
Chain G:
2 binding sites
4 Chimeric TCR Vbeta8.2 chain (mouse variable domain, human constant domain)
A2NTY6, A0A5B9
Mus musculus, Homo sapiens 0 chain bound to carbohydrates

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains
5 il-7racdw127 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 2 (1 molecule) E
6 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 5 (5 molecules) A, E
7 11-(4-fluorophenyl)-N-[(2S + 3S + 4r)-1-(α-D-galactopyranosyloxy)-3 + 4-dihydroxyoctadecan-2-yl]undecanamide 4 (2 molecules) A, C, E, G
8 α-L-fucopyranose 1 (1 molecule) E

Binding sites


Related structures


Bound to carbohydrates
Without carbohydrates