4Y16 (resolution: 2.60 Å)

ID Name Organism Chains bound to carbohydrates
1 Antigen-presenting glycoprotein CD1d1
P11609 (CD1D1_MOUSE)
Mus musculus 1 chain bound to carbohydrates
Chain A:
1 binding site
3 glycosylation head interfaces
3 glycosylation body interfaces
3 N-glycosylations
2 Beta-2-microglobulin
P01887 (B2MG_MOUSE)
Mus musculus 0 chain bound to carbohydrates
3 Chimeric TCR Valpha14/Jalpha18 chain (mouse variable domain, human constant domain)
A0A0B4J1J9, P01848
Mus musculus, Homo sapiens 1 chain bound to carbohydrates
Chain C:
1 binding site
4 Chimeric TCR Vbeta8.2 chain (mouse variable domain, human constant domain)
A2NTY6, A0A5B9
Mus musculus, Homo sapiens 0 chain bound to carbohydrates

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains Binding affinity
5 il-7racdw127 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 2 (1 molecule) A
6 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-[β-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-β-D-glucopyranose 3 (1 molecule) A
7 N-[(2S + 3S + 4r)-3 + 4-dihydroxy-1-{[6-O-(naphthalen-1-ylcarbamoyl)-α-D-galactopyranosyl]oxy}octadecan-2-yl]hexacosanamide 1 (1 molecule) A, C -logKd/Ki=7.43, Kd=37.1nM (PDBbind-CN)
8 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 1 (1 molecule) A

Binding sites


Related structures


Bound to carbohydrates
Without carbohydrates