6MJQ (resolution: 3.00 Å)

ID Name Organism Chains bound to carbohydrates
1 T cell receptor alpha variable 11,T cell receptor alpha variable 11,T cell receptor alpha joining 18,Human nkt tcr alpha chain, chimeric protein
K7N5M3, A0A0B4J1J9
Mus musculus 2 chains bound to carbohydrates
Chain A [auth C]:
1 binding site
Chain F [auth G]:
1 binding site
2 Beta-chain,T cell receptor chain,T cell receptor beta constant 2, CHIMERIC PROTEIN
A2NTY6, A0N8J3, A0A5B9
Mus musculus 0 chain bound to carbohydrates
3 Antigen-presenting glycoprotein CD1d1
P11609 (CD1D1_MOUSE)
Mus musculus 2 chains bound to carbohydrates
Chain C [auth A]:
1 binding site
3 glycosylation head interfaces
4 glycosylation body interfaces
3 N-glycosylations
Chain E:
1 binding site
3 glycosylation head interfaces
5 glycosylation body interfaces
3 N-glycosylations
4 Beta-2-microglobulin
P01887 (B2MG_MOUSE)
Mus musculus 0 chain bound to carbohydrates

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains Binding affinity
5 il-7racdw127 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 6 (3 molecules) C, E
[auth A,E]
6 β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-[α-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-β-D-glucopyranose 4 (1 molecule) C
[auth A]
7 α-D-mannopyranose-(1-3)-β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-[α-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-β-D-glucopyranose 4 (1 molecule) E
10 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 1 (1 molecule) C
[auth A]
11 N-{(2S + 3S + 4r)-3 + 4-dihydroxy-1-[(4-O-{[4-(trifluoromethyl)phenyl]methyl}-α-D-galactopyranosyl)oxy]octadecan-2-yl}hexacosanamide 2 (2 molecules) A, C, E, F
[auth A,C,E,G]
-logKd/Ki=7.88, Kd=13.3nM (PDBbind-CN) ;

Binding sites


Related structures


Bound to carbohydrates
Without carbohydrates