6XNG (resolution: 2.79 Å)

ID Name Organism Chains bound to carbohydrates
1 Antigen-presenting glycoprotein CD1d1
P11609 (CD1D1_MOUSE)
Mus musculus 1 chain bound to carbohydrates
Chain A:
1 binding site
3 glycosylation head interfaces
4 glycosylation body interfaces
3 N-glycosylations
2 Beta-2-microglobulin
P01887 (B2MG_MOUSE)
Mus musculus 0 chain bound to carbohydrates
3 NKT Valpha14 (Mouse)-2C12 TCR Mus musculus 1 chain bound to carbohydrates
Chain C:
1 binding site
4 NKT Vbeta8.2 (Mouse)-2C12 TCR Mus musculus 0 chain bound to carbohydrates

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains
5 il-7racdw127 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 4 (2 molecules) A
6 il-7racdw127 β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 3 (1 molecule) A
7 (3r)-N-[(2S + 3r)-1-(α-D-galactopyranosyloxy)-3-hydroxyheptadecan-2-yl]-3-hydroxyheptadecanamide 1 (1 molecule) A, C

Binding sites


Related structures


Bound to carbohydrates
Without carbohydrates