6WPS (resolution: 3.10 Å)

ID Name Organism Chains bound to carbohydrates
1 Spike glycoprotein
P0DTC2 (SPIKE_SARS2)
Severe acute respiratory syndrome coronavirus 2 3 chains bound to carbohydrates
Chain A:
21 glycosylation head interfaces
7 glycosylation body interfaces
16 N-glycosylations
Chain D [auth B]:
21 glycosylation head interfaces
7 glycosylation body interfaces
16 N-glycosylations
Chain G [auth E]:
21 glycosylation head interfaces
7 glycosylation body interfaces
16 N-glycosylations
2 S309 neutralizing antibody heavy chain
Heavy chain subclass: IGHV1
Homo sapiens 3 chains bound to carbohydrates
Chain B [auth H]:
1 glycosylation head interface
1 glycosylation body interface
Chain E [auth C]:
1 glycosylation head interface
1 glycosylation body interface
Chain H [auth F]:
1 glycosylation head interface
1 glycosylation body interface
3 S309 neutralizing antibody light chain
Light chain subclass: IGKV3 (Kappa)
Homo sapiens 3 chains bound to carbohydrates
Chain C [auth L]:
1 glycosylation head interface
4 glycosylation body interfaces
Chain F [auth D]:
1 glycosylation head interface
4 glycosylation body interfaces
Chain I [auth G]:
1 glycosylation head interface
4 glycosylation body interfaces

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains
4 il-7racdw127 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 24 (12 molecules) A, D, G
[auth A,B,E]
5 α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-[α-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-β-D-glucopyranose 15 (3 molecules) A, B, C, D, E, F, G, H, I
[auth A,B,C,D,E,F,G,H,L]
6 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 33 (33 molecules) A, D, G
[auth A,B,E]

Binding sites


Related structures


Bound to carbohydrates
Without carbohydrates