7K9J (resolution: 3.00 Å)

ID Name Organism Chains bound to carbohydrates
1 Spike glycoprotein
P0DTC2 (SPIKE_SARS2)
Severe acute respiratory syndrome coronavirus 2 3 chains bound to carbohydrates
Chain A:
19 glycosylation head interfaces
19 glycosylation body interfaces
15 N-glycosylations
Chain B:
19 glycosylation head interfaces
19 glycosylation body interfaces
15 N-glycosylations
Chain C:
19 glycosylation head interfaces
19 glycosylation body interfaces
15 N-glycosylations
2 2H04 heavy chain
Heavy chain subclass: IGHV1
Mus musculus 3 chains bound to carbohydrates
Chain D [auth H]:
1 glycosylation head interface
3 glycosylation body interfaces
Chain E [auth I]:
1 glycosylation head interface
3 glycosylation body interfaces
Chain F [auth J]:
1 glycosylation head interface
3 glycosylation body interfaces
3 2H04 light chain
Light chain subclass: IGKV5 (Kappa)
Mus musculus 3 chains bound to carbohydrates
Chain G [auth L]:
1 glycosylation head interface
1 glycosylation body interface
Chain H [auth M]:
1 glycosylation head interface
1 glycosylation body interface
Chain I [auth N]:
1 glycosylation head interface
1 glycosylation body interface

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains
4 il-7racdw127 β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 27 (12 molecules) A, B, C
5 il-7racdw127 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 42 (21 molecules) A, B, C
6 β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-[α-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-β-D-glucopyranose 12 (3 molecules) A, B, C, D, E, F, G, H, I
[auth A,B,C,H,I,J,L,M,N]
7 α-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-β-D-glucopyranose 6 (3 molecules) A, B, C
8 α-D-mannopyranose-(1-6)-β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 9 (3 molecules) A, B, C
9 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 2 (2 molecules) B, C

Binding sites


Related structures


Bound to carbohydrates
Without carbohydrates