7LDJ (resolution: 2.36 Å)

ID Name Organism Chains bound to carbohydrates
1 Spike glycoprotein
P0DTC2 (SPIKE_SARS2)
Severe acute respiratory syndrome coronavirus 2 4 chains bound to carbohydrates
Chain A [auth B]:
1 glycosylation head interface
2 glycosylation body interfaces
1 N-glycosylation
Chain B [auth A]:
1 binding site
2 glycosylation head interfaces
6 glycosylation body interfaces
1 N-glycosylation
Chain C:
2 glycosylation head interfaces
5 glycosylation body interfaces
1 N-glycosylation
Chain D:
1 binding site
2 Nanobody 2
Heavy chain subclass: IGHV1
Vicugna pacos 0 chain bound to carbohydrates

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains
3 β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-[β-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-β-D-glucopyranose 8 (2 molecules) A, B, C
4 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-α-D-mannopyranose-(1-6)-α-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-[β-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-β-D-glucopyranose 4 (1 molecule) B
[auth A]
5 α-D-mannopyranose 1 (1 molecule) B
[auth A]
6 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 1 (1 molecule) D

Binding sites


Related structures


Bound to carbohydrates
Without carbohydrates