6WPT (resolution: 3.70 Å)

ID Name Organism Chains bound to carbohydrates
1 Spike glycoprotein
P0DTC2 (SPIKE_SARS2)
Severe acute respiratory syndrome coronavirus 2 3 chains bound to carbohydrates
Chain A:
18 glycosylation head interfaces
5 glycosylation body interfaces
15 N-glycosylations
Chain B:
19 glycosylation head interfaces
3 glycosylation body interfaces
16 N-glycosylations
Chain C:
19 glycosylation head interfaces
6 glycosylation body interfaces
16 N-glycosylations
2 S309 neutralizing antibody heavy chain
Heavy chain subclass: IGHV1
Homo sapiens 2 chains bound to carbohydrates
Chain D [auth H]:
1 glycosylation head interface
1 glycosylation body interface
Chain F [auth D]:
1 glycosylation head interface
1 glycosylation body interface
3 S309 neutralizing antibody light chain
Light chain subclass: IGKV3 (Kappa)
Homo sapiens 2 chains bound to carbohydrates
Chain E [auth L]:
1 glycosylation head interface
4 glycosylation body interfaces
Chain G [auth E]:
1 glycosylation head interface
2 glycosylation body interfaces

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains
4 il-7racdw127 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 20 (10 molecules) A, B, C
5 β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-[α-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-β-D-glucopyranose 3 (1 molecule) A, F, G
[auth A,D,E]
6 α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-[α-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-β-D-glucopyranose 5 (1 molecule) C, D, E
[auth C,H,L]
7 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 35 (35 molecules) A, B, C

Binding sites


Related structures


Bound to carbohydrates
Without carbohydrates