8GB5 (resolution: 3.05 Å)

ID Name Organism Chains bound to carbohydrates
1 Spike glycoprotein
P0DTC2 (SPIKE_SARS2)
Severe acute respiratory syndrome coronavirus 2 4 chains bound to carbohydrates
Chain A:
1 glycosylation head interface
1 glycosylation body interface
1 N-glycosylation
Chain D:
1 glycosylation head interface
1 glycosylation body interface
1 N-glycosylation
Chain G:
1 glycosylation head interface
2 glycosylation body interfaces
1 N-glycosylation
Chain J:
1 glycosylation head interface
2 glycosylation body interfaces
1 N-glycosylation
2 25F9 Heavy chain
Heavy chain subclass: IGHV3
Macaca mulatta 0 chain bound to carbohydrates
3 25F9 Light chain
Light chain subclass: IGLV1 (Lambda)
Macaca mulatta 2 chains bound to carbohydrates
Chain C:
1 glycosylation body interface
Chain E:
1 glycosylation body interface

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains
4 il-7racdw127 β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 2 (1 molecule) A
5 α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 2 (1 molecule) D
6 β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-[α-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-β-D-glucopyranose 8 (2 molecules) C, E, G, J

Binding sites


Related structures


Bound to carbohydrates
Without carbohydrates