7AKD (resolution: 4.00 Å)

ID Name Organism Chains bound to carbohydrates
1 Spike glycoprotein
P0DTC2 (SPIKE_SARS2)
Severe acute respiratory syndrome coronavirus 2 3 chains bound to carbohydrates
Chain A:
5 binding sites
15 glycosylation head interfaces
6 glycosylation body interfaces
13 N-glycosylations
Chain B:
12 binding sites
11 glycosylation head interfaces
4 glycosylation body interfaces
8 N-glycosylations
Chain C:
13 binding sites
7 glycosylation head interfaces
5 glycosylation body interfaces
6 N-glycosylations
2 47D11 neutralizing antibody heavy chain
Heavy chain subclass: IGHV4
Homo sapiens 2 chains bound to carbohydrates
Chain D:
3 binding sites
1 glycosylation head interface
4 glycosylation body interfaces
Chain F [auth H]:
1 binding site
1 glycosylation head interface
1 glycosylation body interface
3 47D11 neutralizing antibody light chain
Light chain subclass: IGKV3 (Kappa)
Homo sapiens 2 chains bound to carbohydrates
Chain E:
1 glycosylation head interface
3 glycosylation body interfaces
Chain G [auth L]:
1 glycosylation head interface
4 glycosylation body interfaces

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains
4 il-7racdw127 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 20 (10 molecules) A, B, C
5 il-7racdw127 β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 6 (3 molecules) A, B, C
6 α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(3-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 5 (1 molecule) B, F, G
[auth B,H,L]
7 β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-[α-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-β-D-glucopyranose 3 (1 molecule) B, C
8 α-D-mannopyranose-(1-3)-α-D-mannopyranose-(1-6)-β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-[α-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-β-D-glucopyranose 5 (1 molecule) C, D, E
9 6α-α-mannobiose α-D-mannopyranose-(1-6)-α-D-mannopyranose 2 (1 molecule) D
10 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 27 (27 molecules) A, B, C
11 α-L-fucopyranose 3 (3 molecules) A, B, C
12 α-D-mannopyranose 2 (2 molecules) D, F
[auth D,H]

Binding sites


Related structures


Bound to carbohydrates
Without carbohydrates