7VQ0 (resolution: 3.03 Å)

ID Name Organism Chains bound to carbohydrates
1 Spike glycoprotein
P0DTC2 (SPIKE_SARS2)
Severe acute respiratory syndrome coronavirus 2 3 chains bound to carbohydrates
Chain A:
6 binding sites
18 glycosylation head interfaces
9 glycosylation body interfaces
15 N-glycosylations
Chain B:
6 binding sites
16 glycosylation head interfaces
11 glycosylation body interfaces
13 N-glycosylations
1 unassigned-glycosylation
Chain C:
7 binding sites
14 glycosylation head interfaces
8 glycosylation body interfaces
11 N-glycosylations
1 unassigned-glycosylation
2 Neutralizing nanobody P86
Heavy chain subclass: IGHV1
Vicugna pacos 2 chains bound to carbohydrates
Chain D:
1 binding site
Chain F:
2 binding sites

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains
3 il-7racdw127 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 33 (17 molecules) A, B, C, F
4 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-[α-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-β-D-glucopyranose 9 (3 molecules) A, B, C
5 α-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 12 (6 molecules) A, B, C
6 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 29 (29 molecules) A, B, C, D

Binding sites


Related structures


Bound to carbohydrates
Without carbohydrates