8BGG (resolution: 6.04 Å)

ID Name Organism Chains bound to carbohydrates
1 Spike glycoprotein
P0DTC2 (SPIKE_SARS2)
Severe acute respiratory syndrome coronavirus 2 2 chains bound to carbohydrates
Chain A [auth B]:
6 glycosylation head interfaces
2 glycosylation body interfaces
6 N-glycosylations
Chain B [auth C]:
1 glycosylation head interface
1 N-glycosylation
2 Nanobody W25
Heavy chain subclass: IGHV1
Vicugna pacos 1 chain bound to carbohydrates
Chain C [auth Y]:
1 glycosylation body interface

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains
3 α-D-mannopyranose-(1-3)-[α-D-mannopyranose-(1-6)]β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 3 (1 molecule) A, C
[auth B,Y]
4 il-7racdw127 β-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 2 (1 molecule) A
[auth B]
5 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 5 (5 molecules) A, B
[auth B,C]

Binding sites


Related structures


Bound to carbohydrates
Without carbohydrates