7ND9 (resolution: 2.80 Å)

ID Name Organism Chains bound to carbohydrates
1 Spike glycoprotein
P0DTC2 (SPIKE_SARS2)
Severe acute respiratory syndrome coronavirus 2 3 chains bound to carbohydrates
Chain A:
17 glycosylation head interfaces
4 glycosylation body interfaces
13 N-glycosylations
Chain B:
17 glycosylation head interfaces
3 glycosylation body interfaces
13 N-glycosylations
Chain C:
16 glycosylation head interfaces
4 glycosylation body interfaces
11 N-glycosylations
2 COVOX-253H55L Fab heavy chain
Heavy chain subclass: IGHV1
Homo sapiens 1 chain bound to carbohydrates
Chain D [auth H]:
1 glycosylation head interface
2 glycosylation body interfaces
1 N-glycosylation
3 COVOX-253H55L Fab light chain
Light chain subclass: IGKV3 (Kappa)
Homo sapiens 1 chain bound to carbohydrates
Chain E [auth L]:
1 glycosylation body interface

Chain properties


Carbohydrates


ID Common name Description N° of binding sites Bound to chains
4 il-7racdw127 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-β-D-glucopyranose 20 (10 molecules) A, B, C
5 2-acetamido-2-deoxy-β-D-glucopyranose-(1-4)-[α-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-β-D-glucopyranose 3 (1 molecule) B, D, E
[auth B,H,L]
6 zn-α-2-glycoprotein zag 2-acetamido-2-deoxy-β-D-glucopyranose 27 (27 molecules) A, B, C

Binding sites


Related structures


Bound to carbohydrates
Without carbohydrates